Son K. Pham homepage


Son K. Pham I’m a Ph.D student at UC San Diego, working in Pavel Pevzner’s Bioinformatics Lab at the CSE Department

Contact information:

Son Kim Pham
Department of computer science and engineering
University of California San Diego
9500 Gilman Drive
La Jolla, CA 92093-0404 USA.

Tel: +1 - 8585348853
E-mail: kspham--at--cs.ucsd.edu or sonsecure --at- yahoo.com.sg

Publications:

Son Pham, Paul Medvedev, Pavel Pevzner " Mate-pair Consistency and Generating Problems". RECOMB-AB 2012
Son Pham*, Dmitry Antipov*, Alexander Sirotkin, Glenn Tesler, Pavel Pevzner, and Max Alekseyev "Pathset Graphs: A Novel Approach for Comprehensive Utilization of Mate-Pairs in Genome Assembly". Journal of Computational Biology 2012
Paul Medvedev*, Son Pham*, Mark Chaisson, Glenn Tesler and Pavel Pevzner, Paired de Bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers. Journal of Computational Biology
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey Gurevich, Mikhail Dvorkin, Alexander Kulikov, Valery Lesin, Sergey Nikolenko, Son Pham, Andrey Prjibelski, Alexey Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max Alekseyev, and Pavel Pevzner "SPAdes: a New Genome Assembly Algorithm and its Applications to Single-Cell Sequencing". Journal of Computational Biology, 2012. (to appear)
Son Pham*, Dmitry Antipov*, Alexander Sirotkin, Glenn Tesler, Pavel Pevzner, and Max Alekseyev "Pathset Graphs: A Novel Approach for Comprehensive Utilization of Mate-Pairs in Genome Assembly". The 16th Annual Conference on Research in Computational Molecular Biology (RECOMB), 2012. (to appear)
Paul Medvedev*, Son Pham*, Mark Chaisson, Glenn Tesler and Pavel Pevzner, Paired de Bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers, RECOMB 2011.
Son K. Pham and Pavel A. Pevzner, DRIMM-Synteny: Decomposing Genomes into Evolutionary Conserved Segments (accepted)
K. Avrachenkov, N. Litvak, S. Pham, A Singular Pertubation Approach for Choosing the PageRank Damping Factor. Journal: Internet Mathematics 2009
K. Avrachenkov, D. Nemirovsky, Son K. Pham, R. Cascella, R. Battiti, M. Brunato, Eigenvector based reputation measures. Journal: Paradigms for Biologically--Inspired Autonomic Networks and Services 2008
K. Avrachenkov, V. Dobrynin, D. Nemirovsky, S.K. Pham and E. Smirnova, PageRank Based Clustering of Hypertext Document Collections . Proceedings of ACM SIGIR 2008.
K. Avrachenkov, N. Litvak, and K.S. Pham, Distribution of PageRank Mass Among Principle Components of the Web .Proceedings of the 5th Workshop on Algorithms and Models for the Web-Graph (WAW2007, Lecture notes in computer science 2007-Springer)
K. Avrachenkov, D. Nemirovsky and S. Pham, A survey on distributed approaches to graph based reputation measures. Proceedings of International Workshop on Tools for Solving Structured Markov Chains: SMCtools 2007.
V Dobrynin, S Pham, D Patterson, N Rooney, M. Galushka, SOPHIA in Enterprise Track .The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings. 2006

I was born in the Middle and grew up in the South of Vietnam (Long Khanh). My undergraduate study was in computer science at the Applied Mathematics Faculty, St. Petersburg State university in Russia. Currently, I’m at the university of Californa, San Diego for my Ph.D.
My Vietnamese name is written as: Phạm Kim Sơn.

I am now living with the sound of pacific waves crashing against the shore in dreams, with the San Diego gentle sea breezes rustle through hair every afternoon on the beach, with slow and peaceful steps at night and deeply indebted to my wife and daughter for their love and sacrifices.
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Son K. Pham

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