SPADES Assembler

A New Genome Assembly Algorithm for Single-Cell Sequencing

Sibelia

Genome comparison via de Bruijn graph

C-Sibelia

an easy-to-use and highly accurate tool for bacterial genome comparison

Ragout

a tool for reference-assisted assembly (using multiple references)

Rectangle Graph

Rectangle Graph for Repeat Resolution in Genome Assembly

DRIMM-SYNTENY

Synteny block reconstruction for highly duplicated genomes

INIGO

A new algorithm for retrotransposon detection