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We are going to post resources that should be useful for you in completing
your projects.
Please feel free to submit any additional resources that will help
your fellow students!
Blue Horizon
Cray T90
Linpack
General
Writing Research Papers
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The Linpack test is availiable for the students in Sid's class to run. All files are in /work/leary/scalapack.tar - just have the students copy this tar file to their work directories on Blue Horizon (which should be of the form /work/uxxxxxx ) , and extract the various files with the command tar xfv scalapack.tarThey will have to modify the run script lp4 so that the lines # @ initialdir = /work/leary and poe /rmount/work/leary/scalapack.out point to their own work directories rather than /work/leary The executable is scalapack.out , the data file is LU.dat, and
the batch submission script I use to run a 4 node, 32 processor test case
is /work/leary/lp4. (The batch submission command is
The sample ouptut from this run is also included as LL_out.20001. The CPU time should be ignored - it is the wall clock time and MFLOP rate that is relevant. Note the students can revise the script to run on any number of nodes (just change the @node=4,4 line to the desired number). Since there are two processes per node (and 4 threads/process), the total number of processes is 2*number of nodes, or 8 in the sample case on 4 nodes. The integers P and Q (2 and 4 in the sample LU.dat file) are chosen so P*Q=2N (i.e. the processes are put into a virtual P by Q array). Thus P and Q will also have to be changed in the LU.dat file if the number of nodes is changed. Also, there are roughly 256 million words of memory available per node for storage of the matrix; thus the largest matrix that can be run on N nodes (8N processors) is about 16000*sqrt(N) - e.g. for N=4 the limit a system size of 32000 (actually, the limit is a bit higher than this, but this is a good rough guide). This is in fact the identical code used to generate the TOP500 LINPACK numbers. Useful exercises might be to try to figure out R_peak, the maximum Gflop
rate for several numbers of nodes (up to say 16 or so - it starts to get
expensive after this) and N_1/2, the equation system size at
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