Order Score NCBI EMBL Seed/Full Blast Description

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1) 2583 xxxxxxxx AY994055 none Yes Feline infectious peritonitis virus, complete genome

2) 1514 xxxxxxxx AB097865 none No Human immunodeficiency virus 1 proviral DNA, nearly complete genome, isolate:mIDU502

3) 1479 NC_004156 AF451898 none No Heliothis zea virus 1, complete genome

4) 1477 xxxxxxxx AB097872 none No Human immunodeficiency virus 1 proviral DNA, complete genome, isolate:mCSW105

5) 1454 NC_001559 M35027 none No Vaccinia virus, complete genome

6) 1453 xxxxxxxx AF453392 none No Potato leafroll virus strain CIP01, complete genome

7) 1443 xxxxxxxx AB052995 none No Human immunodeficiency virus type 1 subtype E, complete genome, isolate:93JP-NH1

8) 1442 NC_006883 AY939844 none No Cyanophage P-SSM2

9) 1439 NC_005902 AY380826 none No Lymphocystis disease virus - isolate China

10) 1437 xxxxxxxx AF105220 none No Ovine pulmonary adenocarcinoma virus, complete genome

11) 1436 xxxxxxxx AF443097 none No HIV-1 isolate 00BW1795.6 from Botswana, complete genome

12) 1434 xxxxxxxx AY009089 none No Camelpox virus CMS, complete genome

13) 1426 xxxxxxxx AB070352 none No Human immunodeficiency virus type 1 genomic RNA, complete genome, clone:93JP-NH2.5T

14) 1426 xxxxxxxx AB070353 none No Human immunodeficiency virus type 1 genomic RNA, complete genome, clone:93JP-NH2env

15) 1417 xxxxxxxx AY008714 none No HIV-1 isolate 97CNGX-2F from China, complete genome

16) 1417 xxxxxxxx AF197339 none No HIV-1 isolate 93TH065 from Thailand, complete genome

17) 1411 xxxxxxxx AY082968 none No HIV-1 isolate TH 13-26 from Thailand, complete genome

18) 1409 xxxxxxxx AY125894 none No HIV-1 isolate 97TH6-107 from Thailand, complete genome

19) 1403 xxxxxxxx AB078005 none No Human immunodeficiency virus 1 DNA, complete genome, clone:ARES2

20) 1402 NC_002642 AJ293568 none No Yaba-like disease virus

------------------------------ALIGNMENTS-----------------------------------

No. 1

GENOME: Feline infectious peritonitis virus, complete genome

NCBI: xxxxxxxx

EMBL: AY994055

Score: 2583

....AAAAAAAA..............BBBBBBBBBB..aaaaaaaa...bbbbbbbbbb.

Query: 0 CUACUCUUGUACAGAAUGGUAAGCACGUGUAAUAGGAGGUACAAGCCACCCUAUUGCAUA 59

||||********||||||||||||||**********||******** ||**********|

Sbjct: 29137 CUACUCUUGUACAGAAUGGUAAGCACGUGUAAUAGGAGGUACAAGCAACCCUAUUGCAUA 29196

....AAAAAAAA..............BBBBBBBBBB..aaaaaaaa...bbbbbbbbbb.

...

Query: 60 UUA 62

|||

Sbjct: 29197 UUA 29199

...

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No. 2

GENOME: Human immunodeficiency virus 1 proviral DNA, nearly complete genome, isolate:mIDU502

NCBI: xxxxxxxx

EMBL: AB097865

Score: 1514

.... AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa. ..bbbbbbbb

Query: 0 CUAC-UCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCC-ACCCUAUUGC 56

| | +*+****+ || | | || | +++*******||+**+***+ | *+*****+

Sbjct: 6551 CCAGGACAUGUAUUCUAUAGAACAGGAGACAUAAUAGGAGAUAUAAGAAGAGCAUAUUGU 6610

.....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

++ || |

Sbjct: 6611 GAAAUCA 6617

bb.....

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No. 3

GENOME: Heliothis zea virus 1

NCBI: NC_004156

EMBL: AF451898

Score: 1479

....AAAAAAAA..............BBBBBBBBBB .. aaaaaaaa. ..bbbbbb

Query: 0 CUACUCUUGUACAGAAUGGUAAGCACGUGUAAUAGG-AG-GUACAAGCC---ACCCUAUU 54

|| +******* | || || | *****++*++ || ***+***+ | +++***

Sbjct: 218887 -UA-ACUUGUACUGUAU-AUAU-UA-GUGUAUAAAUUAGUGUAUAAGAGUGUAUAUGAUU 218941

....AAAAAAAA..............BBBBBBBBBB....aaaaaaaa......bbbbbb

bbbb.. ..

Query: 55 GCAUAU--UA 62

*+**|| ||

Sbjct: 218942 GUAUAUAGUA 218951

bbbb......

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No. 4

GENOME: Human immunodeficiency virus 1 proviral DNA, complete genome, isolate:mCSW105

NCBI: xxxxxxxx

EMBL: AB097872

Score: 1477

.... AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbb

Query: 0 CUAC-UCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGC 56

| | +*++***+ || | | || | +++*******||+**+***+|| *+*****+

Sbjct: 7177 CCAGGACAAGUAUUCUAUAGAACAGGAGACAUAAUAGGAGAUAUAAGACAAGCAUAUUGU 7236

.....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

++ ||||

Sbjct: 7237 GAGAUUA 7243

bb.....

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No. 5

GENOME: Vaccinia virus, complete genome.

NCBI: NC_001559

EMBL: M35027

Score: 1454

....AAAAAAAA ..... .... .....BBBBBBBBBB ..aaaaaaaa...bbbbb

Query: 0 CUACUCUUGUAC-AGAAU-GGUA---AGCACGUGUAAUAGG-AGGUACAAGCCACCCUAU 53

|| **+*+**+ || | |||| ||| *********+ ||+**+*+++ | +****

Sbjct: 175598 -UAAUCAUAUAAUAGUGUAGGUACUCAGCCGGUGUAAUAGAUAGAUAUAUAUAAUUCUAU 175656

....AAAAAAAA...................BBBBBBBBBB...aaaaaaaa...bbbbb

bbbbb ....

Query: 54 UGCAU---------AUUA 62

*+**+ ||||

Sbjct: 175657 UACACCGGCAGACAAUUA 175674

bbbbb.............

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No. 6

GENOME: Potato leafroll virus strain CIP01, complete genome

NCBI: xxxxxxxx

EMBL: AF453392

Score: 1453

....AAAAAAAA. ..... ........ BBBBBBBBBB..aaaaaaaa.

Query: 0 CUACUCUUGUACA-GAAUG----------GUAAGCAC--GUGUAAUAGGAGGUACAAGCC 46

|| +++***+*| || || |||||| | +***+++***| *+*+*+*+

Sbjct: 5666 -UAAAUCUGUUCAUGAUUGUAACCGUAAAGUAAGCUCGCUUGUUGCAGGA-GGAGAGGAA 5723

....AAAAAAAA...........................BBBBBBBBBB..aaaaaaaa.

..bbbbbbbbbb....

Query: 47 ACCCUAUUGCAUAUUA 62

| ***+*****+ |||

Sbjct: 5724 AACCUGUUGCAA-UUA 5738

..bbbbbbbbbb....

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No. 7

GENOME: Human immunodeficiency virus type 1 subtype E, complete genome, isolate:93JP-NH1

NCBI: xxxxxxxx

EMBL: AB052995

Score: 1443

.... AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbb

Query: 0 CUAC-UCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGC 56

| | +*++***+ | || | | || | +++*******||+**+***+ | *+*****+

Sbjct: 7175 CCAGGACGAGUAUGGUAUAGAACAGGAGACAUAAUAGGAGAUAUAAGAAAAGCAUAUUGU 7234

.....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

*+ ||||

Sbjct: 7235 AAGAUUA 7241

bb.....

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No. 8

GENOME: Cyanophage P-SSM2

NCBI: NC_006883

EMBL: AY939844

Score: 1442

.. ..AAAAAAAA.... ..........BBBBBBBBBB..aaaaaaaa...bbbbbbbb

Query: 0 CU-ACUCUUGUACAGAA--UGGUAAGCACGUGUAAUAGGAGGUACAAGCCACCCUAUUGC 56

|| | +++****+ ||| |||| | | ********+* |+***++*+ | ++****+*

Sbjct: 51009 CUGAUAAGUGUAUUGAAGGUGGU--G-A-GUGUAAUAUG-GUUACUGGA-A-UAUAUUAC 51061

.....AAAAAAAA................BBBBBBBBBB..aaaaaaaa...bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

** | ||

Sbjct: 51062 AUUAAUA 51068

bb.....

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No. 9

GENOME: Lymphocystis disease virus - isolate China

NCBI: NC_005902

EMBL: AY380826

Score: 1439

.... AAAAAAAA... ......... .. BBBBBBBBBB..aaaaaaaa. .

Query: 0 CUAC---UCUUGUACAGA------AUGGUAAGC-AC-GUGUAAUAGGAGGUACAAGCC-A 47

|||| ++*++**+ || || || | | || +***++****||+**++**+ |

Sbjct: 177844 CUACACCAUUGUUAAUGAUGUUUUAU-GUCAUCGACAAUGUUUUAGGAGUUAAGAGAUUA 177902

.......AAAAAAAA......................BBBBBBBBBB..aaaaaaaa...

. bbbbbbbbbb ... .

Query: 48 C--CCUAUUGCAU-AUU-A 62

****++**+* ||| |

Sbjct: 177903 AUUCCUAAAGCUUCAUUGA 177921

...bbbbbbbbbb......

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No. 10

GENOME: Ovine pulmonary adenocarcinoma virus, complete genome

NCBI: xxxxxxxx

EMBL: AF105220

Score: 1437

....AAAAAAAA..............BBBBBBBBBB. . aaaaaaaa...bbbbbbb

Query: 0 CUACUCUUGUACAGAAUGGUAAGCACGUGUAAUAGGA---G-GUACAAGCCACCCUAUUG 55

| | ****+*+* ||| | || ***+**+***| | ***+**** | +**+**+

Sbjct: 4214 CAAAUCUUUUGC--AAUCUUGAG---GUGCAAGAGGAAUAGUGUAAAAGCAA-UCUUUUA 4267

....AAAAAAAA..............BBBBBBBBBB......aaaaaaaa...bbbbbbb

bbb ....

Query: 56 CAU--AUUA 62

+** || |

Sbjct: 4268 AAUCUAUAA 4276

bbb......

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No. 11

GENOME: HIV-1 isolate 00BW1795.6 from Botswana, complete genome

NCBI: xxxxxxxx

EMBL: AF443097

Score: 1436

.... AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbb

Query: 0 CUAC-UCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGC 56

| | +*++*+*+ ||| | || | +*+*******||+**+***+ | *+*****+

Sbjct: 6531 CCAGGACAAGCAUUCUAUGCAACAGGAGAUAUAAUAGGAGAUAUAAGAAAAGCAUAUUGU 6590

.....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

*+ ||||

Sbjct: 6591 ACCAUUA 6597

bb.....

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No. 12

GENOME: Camelpox virus CMS, complete genome

NCBI: xxxxxxxx

EMBL: AY009089

Score: 1434

.... AAAAAAAA ........... ...BBBBBBBBBB..aaaaaaaa... bbbbb

Query: 0 CUAC-UCUUGUAC--AGAAUGGUAAG-CACGUGUAAUAGGAGGUACAAGCCAC--CCUAU 53

| +*****++ | |||| ||| | +*********| *+*++**+ | +****

Sbjct: 180916 --AGUACUUGUGUUAAUGAUGGAAAGUUAUAUGUAAUAGGA-GGAUUAGA-AUUUUCUAU 180971

.....AAAAAAAA.................BBBBBBBBBB..aaaaaaaa.....bbbbb

bbbbb . ...

Query: 54 UGCAU-A---UUA 62

*+**+ | ||

Sbjct: 180972 UUCAACAGGCGUA 180984

bbbbb........

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No. 13

GENOME: Human immunodeficiency virus type 1 genomic RNA, complete genome, clone:93JP-NH2.5T

NCBI: xxxxxxxx

EMBL: AB070352

Score: 1426

....AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbbb

Query: 0 CUACUCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGCA 57

+*++***+ | || | | || | +++*******| +**+***+ | *+*****++

Sbjct: 7192 ----ACAAGUAUGGUAUAGAACAGGAGACAUAAUAGGAAAUAUAAGAAAAGCAUAUUGUG 7247

....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbbb

b ....

Query: 58 U-AUUA 62

+ ||||

Sbjct: 7248 AGAUUA 7253

b.....

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No. 14

GENOME: Human immunodeficiency virus type 1 genomic RNA, complete genome, clone:93JP-NH2env

NCBI: xxxxxxxx

EMBL: AB070353

Score: 1426

....AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbbb

Query: 0 CUACUCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGCA 57

+*++***+ | || | | || | +++*******| +**+***+ | *+*****++

Sbjct: 7183 ----ACAAGUAUGGUAUAGAACAGGAGACAUAAUAGGAAAUAUAAGAAAAGCAUAUUGUG 7238

....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbbb

b ....

Query: 58 U-AUUA 62

+ ||||

Sbjct: 7239 AGAUUA 7244

b.....

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No. 15

GENOME: HIV-1 isolate 97CNGX-2F from China, complete genome

NCBI: xxxxxxxx

EMBL: AY008714

Score: 1417

....AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbbb

Query: 0 CUACUCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGCA 57

+*++***+ || | | || | +++*******||+**+***+ | *+*****++

Sbjct: 6385 ----ACAAGUAUUCUAUAGAACAGGAGACAUAAUAGGAGAUAUAAGAAAAGCAUAUUGUG 6440

....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbbb

b ....

Query: 58 U-AUUA 62

+ ||||

Sbjct: 6441 AGAUUA 6446

b.....

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No. 16

GENOME: HIV-1 isolate 93TH065 from Thailand, complete genome

NCBI: xxxxxxxx

EMBL: AF197339

Score: 1417

....AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbbb

Query: 0 CUACUCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGCA 57

+*++***+ || | | || | +++*******||+**+***+ | *+*****++

Sbjct: 7102 ----ACAAGUAUUCUAUAGAACAGGAGACAUAAUAGGAGAUAUAAGAAAAGCAUAUUGUG 7157

....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbbb

b ....

Query: 58 U-AUUA 62

+ ||||

Sbjct: 7158 AGAUUA 7163

b.....

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No. 17

GENOME: HIV-1 isolate TH 13-26 from Thailand, complete genome

NCBI: xxxxxxxx

EMBL: AY082968

Score: 1411

.... AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbb

Query: 0 CUAC-UCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGC 56

| | +*++***+ || | || | +++*******||+**+***+ | *+*****+

Sbjct: 6376 CCAGGACAAGUAUUCUAUCAAACAGGAGACAUAAUAGGAGAUAUAAGAAAAGCAUAUUGU 6435

.....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

++ ||||

Sbjct: 6436 GAGAUUA 6442

bb.....

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No. 18

GENOME: HIV-1 isolate 97TH6-107 from Thailand, complete genome

NCBI: xxxxxxxx

EMBL: AY125894

Score: 1409

.... AAAAAAAA......... .....BBBBBBBBBB..aaaaaaaa... bbbbbbbb

Query: 0 CUAC-UCUUGUACAGAAUGGUA-AGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGC 56

| | +*++***+ || | | || | +++*******||+**+***+ | *+*****+

Sbjct: 6357 CCAGGACAAGUAUUCUAUAGAACAGGAGACAUAAUAGGAGAUAUAAGAAAAGCAUAUUGU 6416

.....AAAAAAAA...............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

++ |||

Sbjct: 6417 GAGGUUA 6423

bb.....

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No. 19

GENOME: Human immunodeficiency virus 1 DNA, complete genome, clone:ARES2

NCBI: xxxxxxxx

EMBL: AB078005

Score: 1403

... . AAAAAAAA..............BBBBBBBBBB..aaaaaaaa... bbbbbbbb

Query: 0 CUA-C-UCUUGUACAGAAUGGUAAGCACGUGUAAUAGGAGGUACAAGCCAC-CCUAUUGC 56

| | *+**+*** || || | +++*******| +**+***+|| *+*****+

Sbjct: 7110 --AGCAUUUUAUAC--AA----CAGGAGACAUAAUAGGAAAUAUAAGACAAGCAUAUUGU 7161

......AAAAAAAA..............BBBBBBBBBB..aaaaaaaa....bbbbbbbb

bb ....

Query: 57 AU-AUUA 62

*+ ||||

Sbjct: 7162 AACAUUA 7168

bb.....

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No. 20

GENOME: Yaba-like disease virus

NCBI: NC_002642

EMBL: AJ293568

Score: 1402

.... AAAAAAAA..............BBBBBBBBBB..aaaaaaaa.. . bbb

Query: 0 CUAC---UCUUGUACAGAAUGGUAAGCACGUGUAAUAGGAGGUACAAGCCA-C----CCU 51

||| ++**+*+* ||| |||| | +***+****+| **++**++ | | ++*

Sbjct: 115598 -UACAUUAGUUAUGC--AAUUGUAA-UAAUUGUUAUAGUAUGUGUAACAAAGCAAGUUUU 115653

.......AAAAAAAA..............BBBBBBBBBB..aaaaaaaa........bbb

bbbbbbb....

Query: 52 AUUGCAUAUUA 62

**++**+| |

Sbjct: 115654 AUACCAAAAUG 115664

bbbbbbb....

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