| When: | Tuesday / Thursday 3:30-4:50pm (lectures) |
| Friday 3-3:50pm (discussion section) | |
| Where: | Warren Lecture Hall (WLH) 2110 |
Instructors:
Teaching Assistants:
Textbook: An introduction to bioinformatics algorithms
Neil Jones and Pavel Pevzner, ISBN 978-0262101066
Book website
| Date | Topic | Slides |
|---|---|---|
| Tuesday, March 29, 2011 | DNA mapping | Lecture 1 |
| Thursday, March 31, 2011 | Motifs | Lecture 2 |
| Tuesday, April 05, 2011 | Edit Distance | Lecture 3 |
| Thursday, April 07, 2011 | Alignment algorithms | Lecture 4 |
| Tuesday, April 12, 2011 | Multiple Alignment | Lecture 5 |
| Thursday, April 14, 2011 | Divide and Conquer algorithms | Lecture 6 |
| Tuesday, April 19, 2011 | Graphs in DNA sequencing | Lecture 7 |
| Thursday, April 21, 2011 | Mass spectrometry algorithms | Lecture 8 |
| Tuesday, April 26, 2011 | Mass spectrometry algorithms | Lecture 9 |
| Thursday, April 28, 2011 | Pattern Matching | Lecture 10 |
| Tuesday, May 03, 2011 | --- Midterm --- | |
| Thursday, May 05, 2011 | Problem Formulation | |
| Tuesday, May 10, 2011 | HMM theory and algorithms | Lecture 12 |
| Thursday, May 12, 2011 | HMM applications | Lecture 13 |
| Tuesday, May 17, 2011 | Gene Finding | Lecture 14 |
| Thursday, May 19, 2011 | Clustering/microarrays | Lecture 15 |
| Tuesday, May 24, 2011 | Molecular Evolution I (neighbor joining, parsimony) | Lecture 16 |
| Thursday, May 26, 2011 | Molecular Evolution (maximum likelihood) | Lecture 17 |
| Tuesday, May 31, 2011 | Molecular signatures of natural selection | Lecture 18 |
| Thursday, June 02, 2011 | Applications to pathogen evolution | |
| Monday, June 06, 2011 | --- Final --- |
