Lectures: MW 9:30-10:50
TA:
Course Information:
| Assignment | Due date | Data |
|---|---|---|
| a1.pdf | 4/15/2010 | mzXML |
Lectures
| Lecture | Topic | Slides | Suggested Reading |
|---|---|---|---|
| Week 1: 3/29, 3/31 | Data sources |
ppt |
|
| Week 2: 4/5, 4,7 | Mass spectrometry basics | pptx (updated 4/7/2010) pdf of slides (updated 4/7/2010) |
Aebersold and Mann SILAC quantitation Tag based filtering (InsPect) Forbidden pairs |
| Week 5: 4/26,4/28 | Supervised Classification Perceptron Linear Discriminant Analysis ML separation Linear programming |
pptx |
|
| Week 6: 5/3,5/5 | Supervised Classification
Maximum Margin Classifier SVMs and kernel methods |
pptx |
|
| Week 7: 5/10,5/12 | Expression analysis via sequencing Fast mapping of reads Midterm I |
pptx |