Backgrounds

I am working with prof. Pavel Pevzner on developing algorithms in computational mass spectrometry. My current research focus is on (1) evaluating statistical significance of peptide identifications and (2) integrating de novo peptide sequencing with database search using the generating function of tandem mass spectra.

Education


  • Ph.D. in Computer Science and Engineering, University of California, San Diego, USA, Fall 2006 - present.
  • M.S. in Computer Science and Engineering, Seoul National University, Seoul, Korea, 2000 - 2002.
  • B.S. in Computer Science and Engineering, Seoul National University, Seoul, Korea, 1996 - 2000.
  • Graduation, Seoul Science High School, Seoul, Korea, 1993 - 1996.

Recent Publications



Conference Presentations (Oral)


  • Sangtae Kim, Nuno Bandeira, Pavel Pevzner, Spectral Profiles: A Novel Representation of Tandem Mass Spectra and its Application for Gapped Peptide Generation, 57th American Society for Mass Spectrometry Conference (ASMS), Philadelphia, USA, June 2009.
  • Sangtae Kim, Nuno Bandeira, Pavel Pevzner, Spectral Profiles: A Novel Representation of Tandem Mass Spectra and its Applications for De Novo Peptide Sequencing and Identifications, 5th Annual US HUPO Conference, San Diego, USA, Feb. 2009.
  • Sangtae Kim, Nitin Gupta, Pavel Pevzner, Evaluating Statistical Significance of Peptide Identifications Using the Partition Function of Tandem Mass Spectra, HUPO 6th Annual World Congress, Seoul, Korea, Oct., 2007.
  • Pavel Pevzner, Sangtae Kim, Nitin Gupta, The Partition Function of Tandem Mass Spectra: a New Approach to Evaluating Statistical Significance of Peptide Identifications, 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, USA, June, 2007.

Conference Presentations (Poster)


  • ASMS 2008, HUPO 2007, HUPO 2005, HUPO 2004, ISMB 2004, RECOMB 2002

Previous Publications



Conference Organization



CSS file used in this page is inspired from the hompages of B. Han