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BIOINFORMATICS

  RAPID detection of gene gene interactions in genome wide association studies
Executable/C++ code (2010) download
Publication PDF


  EULER-USR+: Ultra Short Reads assembly (best for Illumina and 454)
Executable/C++ code (2008) download
Publication PDF


  2SNP: Scalable Phasing Method for Trios and Unrelated Individuals
Executable/C++ code (2007) download
Open Source Project please e-mail modifications to dima@cs.ucsd.edu
Publication PDF1, PDF2
on-line web service http://alla.cs.gsu.edu/~software/2SNP


  MLR-Tagging: Genotype Tagging Based on Multivariate Linear Regression
Executable ver. 1.1 (2006) download
Publication PDF


GRAPHS / COMBINATORICS /SETS

  Finding Maximum Cligue in the Graph
C++ code ver. 1.0 (2008) download, graph.txt
Information http://www.geocities.com/dharwadker/clique/


  Optimal Partitioning for the Load Balancing Problems
C++ code ver. 1.0 (2010) download


STATISTICS

  Fisher exact and Chi-Square tests for testing significance of 2x2,2x3,..,2xC contingency tables
C++ code ver. 1.2 (2008) download
Publication PDF
Fisher 2x2 on-line web service http://statpages.org/ctab2x2.html
Fisher 2x3 on-line web service http://faculty.vassar.edu/lowry/vsfreq.html
Chi-Sq 2x3C on-line web service http://www.psych.ku.edu/preacher/chisq/chisq.htm


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