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Journal Papers:

Banu Dost et al.

"Identification and quantification of post-translational modification variants and false discovery rates",

(in preparation)

 

Banu Dost, Nuno BandeiraXiangqian LiZhouxin Shen, Steve Briggs, Vineet Bafna.

"Accurate mass spectrometry based protein quantification via shared peptides"

(submitted)

 

Banu Dost,  Andrew Su, Chunlei Wu, Vineet Bafna (2009).

"TCLUST: A fast algorithm for clustering genome-scale expression data"

IEEE/ACM Transactions on Computational Biology and Bioinformatics [in press]

 

Banu Dost, Tomer Shlomi, Nitin Gupta, Vineet Bafna, and Roded Sharan (2008).

"QNet: A tool for querying biological networks"

 Journal of Computational Biology. 15(7):913-25. [Pubmed] [pdf]

 

Buhm Han, Banu Dost, Shaojie Zhang and Vineet Bafna (2008).

"Structural alignment of pseudoknotted RNA"

  Journal of Computational Biology. 15(5): 489-504. [Pubmed] [pdf]

 

Conference Papers:

 

Banu Dost, Nuno BandeiraXiangqian LiZhouxin Shen, Steve Briggs, Vineet Bafna

"Shared peptides in mass spectrometry based protein quantification"

 RECOMB 2009, also  published in Lecture Notes in Bioinformatics, 5541, p. 356-371. [pdf]

 

Banu Dost, Tomer Shlomi, Nitin Gupta, Vineet Bafna, and Roded Sharan

"QNet: A tool for querying biological networks"

RECOMB 2007, also  published in Lecture Notes in Bioinformatics, 4453, p. 1-15. [pdf]

 

Banu Dost, Buhm Han, Shaojie Zhang and Vineet Bafna

"Structural alignment of pseudoknotted RNA"

RECOMB 2006, also  published in Lecture Notes in Bioinformatics, 3909, p. 143-158. [pdf]

 

 

Poster  and Oral Presentations:

Recomb 2009 [ppt, pdf]

US HUPO 2009 (Student Poster Award) [pdf]

UCSD Research Expo 2009

Recomb 2007 [ppt, pdf]

UCSD Research Expo 2007

Recomb 2006  [ppt, pdf]

     

This site was last updated 11/29/09