TCLUST: Tanimoto-coefficient based clustering

• Click here to download the code. (C++)

QNET: Querying protein interaction networks

•  Click here to download the code. (C++)

You need Blast installed on the machine, the program calls Blast for sequence similarity. In the zipped folder , 3 PPI networks are included: fly (DIP, 2005), human Kegg and yeast (DIP, 2005).  You can also find some random trees extracted from yeast DIP network.

PAL: Sequence and Structural Alignment of Pseudoknotted RNA sequences.

• Click here to download the code (C++)

Download sample RNA families. 

Detected novel members of families RF00165 and RF00507.