Splicing Graphs of Chromosome 21

To be extended soon! :-)

To demonstrate the performance of our splicing graph approach to EST assembly we applied it to chromosome 21. We started with downloading the known genes of chromosome 21 from Ensembl, Human Build 29 and extractet their genomic sequence. Then we mapped the representative sequences of UniGene #152 onto these sequences (using blastn). ESTs which did not align well over at least 80% of their length or which resulted in multiple hits were discarded from further analysis. The remaining UniGene clusters were used to build splicing graphs and to extract splice sites showing putative alternative splicing events. A detailed description of the EST assembly approach as well as the resulting graphs and alternative splicing candidates are given below.

EST Assembly Approach

  1. Preprocessing: We apply EMBOSS tools to clip remaining vector sequences, to remove poly-A tails, and to trim low quality end sequence.
  2. Error correction: Sequencing errors are a serious problem for splicing graphs. To correct a given read we align it against the EST cluster (using blastn). We filter out alignments of low quality (alignment length less than 30 bases, less than 90% sequence identity in the overlapping region, or a window of especially low sequence quality) and correct the sequence of the original read by a majority vote of the bases aligned to it.
  3. Trimming & filtering: We trim uncovered sequence ends, and filter out reads which contain uncovered regions in the middle of the sequence.
  4. Splice graph construction: We mapped each EST to the genomic template (using sim4) and checked the resulting alignments. Only alignments spanning more than 80% of the EST with conserved standard splice sites and high alignment quality (more than 90% sequence identity) were used to build the splicing graph.

Splicing Graphs

For each UniGene cluster which could be mapped to a known Ensembl gene of chromosome 21 we show: Gene ID, Ensemble Gene ID, UniGene ID, gene description, gene position (start, end, and strand), a ps/pdf-file, containing a visualization of the splicing graph, a text-file containing the description of this graph (therein ESTs which support putative splice sites are marked by &lsquo * &rsquo), and a text-file containing a list of putative assemblies combined with the number of supporting ESTs, as well as their translations.

Gene ID Ensembl Gene ID UniGene ID description start end strand splicing graph nodes & edge data isoforms
STCH ENSG00000155304 Hs.352341 MICROSOMAL STRESS 70 PROTEIN ATPASE CORE PRECURSOR. [Source:SWISSPROT;Acc:P48723] 12410570 12420884 -1 ps.gz pdf data assemblies, translations
SAMSN1 ENSG00000155307 Hs.221851 SAM-DOMAIN PROTEIN SAMSN-1 (SAM DOMAIN 12522963 12621114 -1 ps.gz pdf data assemblies, translations
SAMSN1 ENSG00000155307 Hs.24633 SAM-DOMAIN PROTEIN SAMSN-1 (SAM DOMAIN 12522963 12621114 -1 ps.gz pdf data assemblies, translations
CXADR ENSG00000154639 Hs.79187 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR PRECURSOR (COXSACKIEVIRUS B- ADENOVIRUS RECEPTOR) (HCAR) (CVB3 BINDING PROTEIN). [Source:SWISSPROT;Acc:P78310] 15550684 15604595 1 ps.gz pdf data assemblies, translations
C21orf91 ENSG00000154642 Hs.293811 EURL PROTEIN HOMOLOG. [Source:SWISSPROT;Acc:Q9NYK6] 15790030 15820406 -1 ps.gz pdf data assemblies, translations
C21orf91 ENSG00000154642 Hs.49391 EURL PROTEIN HOMOLOG. [Source:SWISSPROT;Acc:Q9NYK6] 15790030 15820406 -1 ps.gz pdf data assemblies, translations
C21orf68 ENSG00000154645 Hs.283725 TRANSMEMBRANE PROTEIN MT75 PRECURSOR (PROTEIN C21ORF68) (PRED12 PROTEIN). [Source:SWISSPROT;Acc:Q9H9P2] 16282871 16305015 1 ps.gz pdf data assemblies, translations
PRSS7 ENSG00000154646 Hs.158333 ENTEROPEPTIDASE PRECURSOR (EC 3.4.21.9) (ENTEROKINASE). [Source:SWISSPROT;Acc:P98073] 16307020 16441302 -1 ps.gz pdf data assemblies, translations
PPIA ENSG00000154650 Hs.342389 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (EC 5.2.1.8) (PPIASE) (ROTAMASE) (CYCLOPHILIN A) (CYCLOSPORIN A-BINDING PROTEIN). [Source:SWISSPROT;Acc:P05092] 16895384 16896143 1 ps.gz pdf data assemblies, translations
NCAM2 ENSG00000154654 Hs.177691 NEURAL CELL ADHESION MOLECULE 2 PRECURSOR (N-CAM 2). [Source:SWISSPROT;Acc:O15394] 19232908 19492426 1 ps.gz pdf data assemblies, translations
JAM2 ENSG00000154721 Hs.312267 JUNCTIONAL ADHESION MOLECULE 2 PRECURSOR (VASCULAR ENDOTHELIAL JUNCTION-ASSOCIATED MOLECULE) (VE-JAM). [Source:SWISSPROT;Acc:P57087] 23591888 23667222 1 ps.gz pdf data assemblies, translations
ATP5J ENSG00000154723 Hs.73851 ATP SYNTHASE COUPLING FACTOR 6 23676799 23687972 -1 ps.gz pdf data assemblies, translations
GABPA ENSG00000154727 Hs.78 GA BINDING PROTEIN ALPHA CHAIN (GABP-ALPHA SUBUNIT) (TRANSCRIPTION FACTOR E4TF1-60) (NUCLEAR RESPIRATORY FACTOR-2 SUBUNIT ALPHA). [Source:SWISSPROT;Acc:Q06546] 23687720 23721951 1 ps.gz pdf data assemblies, translations
APP ENSG00000142192 Hs.137324 ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN PRECURSOR (PROTEASE NEXIN-II) (PN-II) (APPI) [CONTAINS: BETA-AMYLOID PROTEIN (BETA-APP) (A-BETA)]. [Source:SWISSPROT;Acc:P05067] 23833105 24122926 -1 ps.gz pdf data assemblies, translations
APP ENSG00000142192 Hs.170424 ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN PRECURSOR (PROTEASE NEXIN-II) (PN-II) (APPI) [CONTAINS: BETA-AMYLOID PROTEIN (BETA-APP) (A-BETA)]. [Source:SWISSPROT;Acc:P05067] 23833105 24122926 -1 ps.gz pdf data assemblies, translations
APP ENSG00000142192 Hs.266859 ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN PRECURSOR (PROTEASE NEXIN-II) (PN-II) (APPI) [CONTAINS: BETA-AMYLOID PROTEIN (BETA-APP) (A-BETA)]. [Source:SWISSPROT;Acc:P05067] 23833105 24122926 -1 ps.gz pdf data assemblies, translations
APP ENSG00000142192 Hs.314765 ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN PRECURSOR (PROTEASE NEXIN-II) (PN-II) (APPI) [CONTAINS: BETA-AMYLOID PROTEIN (BETA-APP) (A-BETA)]. [Source:SWISSPROT;Acc:P05067] 23833105 24122926 -1 ps.gz pdf data assemblies, translations
ADAMTS1 ENSG00000154734 Hs.8230 ADAMTS-1 PRECURSOR (EC 3.4.24.-) (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 1) (ADAM-TS 1) (ADAM-TS1) (METH-1). [Source:SWISSPROT;Acc:Q9UHI8] 24788591 24797700 -1 ps.gz pdf data assemblies, translations
ADAMTS5 ENSG00000154736 Hs.58324 ADAMTS-5 PRECURSOR (EC 3.4.24.-) (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 5) (ADAM-TS 5) (ADAM-TS5) (AGGRECANASE-2) (ADMP-2) (ADAM-TS 11). [Source:SWISSPROT;Acc:Q9UNA0] 24873748 24918817 -1 ps.gz pdf data assemblies, translations
Q96F73 ENSG00000156239 Hs.163846 PUTATIVE N6-DNA-METHYLTRANSFERASE (EC 2.1.1.-) (PROTEIN PRED28) (M.HSAHEMK2P). [Source:SWISSPROT;Acc:Q9Y5N5] 26828375 26837567 -1 ps.gz pdf data assemblies, translations
C21orf6 ENSG00000156253 Hs.34136 PROTEIN C21ORF6 (GL011). [Source:SWISSPROT;Acc:P57060] 26957979 26971582 -1 ps.gz pdf data assemblies, translations
C21orf6 ENSG00000156253 Hs.371995 PROTEIN C21ORF6 (GL011). [Source:SWISSPROT;Acc:P57060] 26957979 26971582 -1 ps.gz pdf data assemblies, translations
USP16 ENSG00000156256 Hs.56219 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 (EC 3.1.2.15) (UBIQUITIN THIOLESTERASE 16) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 16) (DEUBIQUITINATING ENZYME 16) (UBIQUITIN PROCESSING PROTEASE UBP-M). [Source:SWISSPROT;Acc:Q9Y5T5] 26976871 27006404 1 ps.gz pdf data assemblies, translations
USP16 ENSG00000156256 Hs.99819 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 (EC 3.1.2.15) (UBIQUITIN THIOLESTERASE 16) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 16) (DEUBIQUITINATING ENZYME 16) (UBIQUITIN PROCESSING PROTEASE UBP-M). [Source:SWISSPROT;Acc:Q9Y5T5] 26976871 27006404 1 ps.gz pdf data assemblies, translations
CCT8 ENSG00000156261 Hs.125113 T-COMPLEX PROTEIN 1 27008546 27024394 -1 ps.gz pdf data assemblies, translations
CCT8 ENSG00000156261 Hs.15071 T-COMPLEX PROTEIN 1 27008546 27024394 -1 ps.gz pdf data assemblies, translations
CCT8 ENSG00000156261 Hs.332008 T-COMPLEX PROTEIN 1 27008546 27024394 -1 ps.gz pdf data assemblies, translations
BACH1 ENSG00000156273 Hs.154276 TRANSCRIPTION REGULATOR PROTEIN BACH1 (BTB AND CNC HOMOLOG 1) (HA2303). [Source:SWISSPROT;Acc:O14867] 27249692 27296773 1 ps.gz pdf data assemblies, translations
TIAM1 ENSG00000156299 Hs.186890 T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 (TIAM1 PROTEIN). [Source:SWISSPROT;Acc:Q13009] 29071168 29217767 -1 ps.gz pdf data assemblies, translations
SRA4_HUMAN ENSG00000156304 Hs.256009 CTD-BINDING SR-LIKE PROTEIN RA4 (FRAGMENT). [Source:SWISSPROT;Acc:O95104] 29621741 29682462 -1 ps.gz pdf data assemblies, translations
C21orf108 ENSG00000142207 Hs.254679   30265661 30343579 -1 ps.gz pdf data assemblies, translations
Q96HZ7 ENSG00000159074 Hs.58149   30343868 30344698 1 ps.gz pdf data assemblies, translations
C21orf63 ENSG00000166979 Hs.208358 PROTEIN C21ORF63 PRECURSOR (PROTEIN PRED34) (SUE21). [Source:SWISSPROT;Acc:P58658] 30363591 30465929 1 ps.gz pdf data assemblies, translations
C21orf63 ENSG00000166979 Hs.255283 PROTEIN C21ORF63 PRECURSOR (PROTEIN PRED34) (SUE21). [Source:SWISSPROT;Acc:P58658] 30363591 30465929 1 ps.gz pdf data assemblies, translations
C21orf63 ENSG00000166979 Hs.30156 PROTEIN C21ORF63 PRECURSOR (PROTEIN PRED34) (SUE21). [Source:SWISSPROT;Acc:P58658] 30363591 30465929 1 ps.gz pdf data assemblies, translations
C21orf63 ENSG00000166979 Hs.304292 PROTEIN C21ORF63 PRECURSOR (PROTEIN PRED34) (SUE21). [Source:SWISSPROT;Acc:P58658] 30363591 30465929 1 ps.gz pdf data assemblies, translations
Q96LN5 ENSG00000166984 Hs.42034 CDNA FLJ25349 FIS 30527397 30536272 -1 ps.gz pdf data assemblies, translations
C21orf59 ENSG00000159079 Hs.5811 PROTEIN C21ORF59. [Source:SWISSPROT;Acc:P57076] 30552524 30563342 -1 ps.gz pdf data assemblies, translations
SYNJ1 ENSG00000159082 Hs.127416 SYNAPTOJANIN 1 (EC 3.1.3.56) (SYNAPTIC INOSITOL-1 30579502 30677635 -1 ps.gz pdf data assemblies, translations
SYNJ1 ENSG00000159082 Hs.33785 SYNAPTOJANIN 1 (EC 3.1.3.56) (SYNAPTIC INOSITOL-1 30579502 30677635 -1 ps.gz pdf data assemblies, translations
C21orf66 ENSG00000159086 Hs.192480 GC-RICH SEQUENCE DNA-BINDING FACTOR HOMOLOG. [Source:SWISSPROT;Acc:Q9Y5B6] 30685560 30722427 -1 ps.gz pdf data assemblies, translations
C21orf66 ENSG00000159086 Hs.283771 GC-RICH SEQUENCE DNA-BINDING FACTOR HOMOLOG. [Source:SWISSPROT;Acc:Q9Y5B6] 30685560 30722427 -1 ps.gz pdf data assemblies, translations
C21orf66 ENSG00000159086 Hs.297559 GC-RICH SEQUENCE DNA-BINDING FACTOR HOMOLOG. [Source:SWISSPROT;Acc:Q9Y5B6] 30685560 30722427 -1 ps.gz pdf data assemblies, translations
OLIG2 ENSG00000159104 Hs.176977 PROTEIN KINASE C-BINDING PROTEIN RACK17 (PROTEIN KINASE C BINDING PROTEIN 2) (FRAGMENT). [Source:SWISSPROT;Acc:Q13516] 30976721 30979929 1 ps.gz pdf data assemblies, translations
IFNAR1 ENSG00000142166 Hs.1513 INTERFERON-ALPHA/BETA RECEPTOR ALPHA CHAIN PRECURSOR (IFN-ALPHA-REC). [Source:SWISSPROT;Acc:P17181] 31275711 31307284 1 ps.gz pdf data assemblies, translations
IFNGR2 ENSG00000159128 Hs.312712 INTERFERON-GAMMA RECEPTOR BETA CHAIN PRECURSOR (INTERFERON-GAMMA RECEPTOR ACCESSORY FACTOR-1) (AF-1) (INTERFERON-GAMMA TRANSDUCER-1). [Source:SWISSPROT;Acc:P38484] 31353630 31388248 1 ps.gz pdf data assemblies, translations
C21orf4 ENSG00000142188 Hs.297567 MEMBRANE PROTEIN C21ORF4. [Source:SWISSPROT;Acc:P56557] 31401438 31430679 -1 ps.gz pdf data assemblies, translations
C21orf55 ENSG00000170167 Hs.121197 CHROMOSOME 21 OPEN READING FRAME 55. [Source:RefSeq;Acc:NM_017833] 31436265 31442208 -1 ps.gz pdf data assemblies, translations
GART ENSG00000159131 Hs.144097 TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES: PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE); PHOSPHORIBOSYLFORMYLGLY [Source:SWISSPROT;Acc:P22102] 31454859 31490049 -1 ps.gz pdf data assemblies, translations
GART ENSG00000159131 Hs.368983 TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES: PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE); PHOSPHORIBOSYLFORMYLGLY [Source:SWISSPROT;Acc:P22102] 31454859 31490049 -1 ps.gz pdf data assemblies, translations
GART ENSG00000159131 Hs.82285 TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES: PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE); PHOSPHORIBOSYLFORMYLGLY [Source:SWISSPROT;Acc:P22102] 31454859 31490049 -1 ps.gz pdf data assemblies, translations
SON ENSG00000159140 Hs.148201 SON PROTEIN (SON3) (NEGATIVE REGULATORY ELEMENT-BINDING PROTEIN) (NRE- BINDING PROTEIN) (DBP-5) (BAX ANTAGONIST SELECTED IN SACCHAROMYCES 1) (BASS1) (PROTEIN C21ORF50). [Source:SWISSPROT;Acc:P18583] 31493778 31528240 1 ps.gz pdf data assemblies, translations
SON ENSG00000159140 Hs.201608 SON PROTEIN (SON3) (NEGATIVE REGULATORY ELEMENT-BINDING PROTEIN) (NRE- BINDING PROTEIN) (DBP-5) (BAX ANTAGONIST SELECTED IN SACCHAROMYCES 1) (BASS1) (PROTEIN C21ORF50). [Source:SWISSPROT;Acc:P18583] 31493778 31528240 1 ps.gz pdf data assemblies, translations
SON ENSG00000159140 Hs.291670 SON PROTEIN (SON3) (NEGATIVE REGULATORY ELEMENT-BINDING PROTEIN) (NRE- BINDING PROTEIN) (DBP-5) (BAX ANTAGONIST SELECTED IN SACCHAROMYCES 1) (BASS1) (PROTEIN C21ORF50). [Source:SWISSPROT;Acc:P18583] 31493778 31528240 1 ps.gz pdf data assemblies, translations
SON ENSG00000159140 Hs.92909 SON PROTEIN (SON3) (NEGATIVE REGULATORY ELEMENT-BINDING PROTEIN) (NRE- BINDING PROTEIN) (DBP-5) (BAX ANTAGONIST SELECTED IN SACCHAROMYCES 1) (BASS1) (PROTEIN C21ORF50). [Source:SWISSPROT;Acc:P18583] 31493778 31528240 1 ps.gz pdf data assemblies, translations
DONSON ENSG00000159147 Hs.17834 DOWNSTREAM OF SON GENE PROTEIN (PROTEIN C21ORF60) (B17). [Source:SWISSPROT;Acc:Q9NYP3] 31528639 31593072 -1 ps.gz pdf data assemblies, translations
DONSON ENSG00000159147 Hs.189709 DOWNSTREAM OF SON GENE PROTEIN (PROTEIN C21ORF60) (B17). [Source:SWISSPROT;Acc:Q9NYP3] 31528639 31593072 -1 ps.gz pdf data assemblies, translations
ITSN1 ENSG00000142183 Hs.66392 INTERSECTIN 1 (SH3 DOMAIN-CONTAINING PROTEIN 1A) (SH3P17). [Source:SWISSPROT;Acc:Q15811] 31593374 31841006 1 ps.gz pdf data assemblies, translations
ATP5O ENSG00000159186 Hs.336976 ATP SYNTHASE OLIGOMYCIN SENSITIVITY CONFERRAL PROTEIN 31854185 31866516 -1 ps.gz pdf data assemblies, translations
MRPS6 ENSG00000170133 Hs.255831 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 (MRP-S6). [Source:SWISSPROT;Acc:P82932] 32024306 32093756 1 ps.gz pdf data assemblies, translations
MRPS6 ENSG00000170133 Hs.268016 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 (MRP-S6). [Source:SWISSPROT;Acc:P82932] 32024306 32093756 1 ps.gz pdf data assemblies, translations
MRPS6 ENSG00000170133 Hs.302742 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 (MRP-S6). [Source:SWISSPROT;Acc:P82932] 32024306 32093756 1 ps.gz pdf data assemblies, translations
MRPS6 ENSG00000170133 Hs.325465 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 (MRP-S6). [Source:SWISSPROT;Acc:P82932] 32024306 32093756 1 ps.gz pdf data assemblies, translations
MRPS6 ENSG00000170133 Hs.350821 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 (MRP-S6). [Source:SWISSPROT;Acc:P82932] 32024306 32093756 1 ps.gz pdf data assemblies, translations
MRPS6 ENSG00000170133 Hs.6945 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 (MRP-S6). [Source:SWISSPROT;Acc:P82932] 32024306 32093756 1 ps.gz pdf data assemblies, translations
KCNE2 ENSG00000159197 Hs.268538 MINIMUM POTASSIUM ION CHANNEL-RELATED PEPTIDE 1 (MIRP1) (MINK-RELATED PEPTIDE 1). [Source:SWISSPROT;Acc:Q9Y6J6] 32314751 32321872 1 ps.gz pdf data assemblies, translations
KCNE1 ENSG00000142154 Hs.121495 ISK SLOW VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN (MINIMAL POTASSIUM CHANNEL) (MINK). [Source:SWISSPROT;Acc:P15382] 32399974 32400360 -1 ps.gz pdf data assemblies, translations
DSCR1 ENSG00000159200 Hs.184222 CALCIPRESSIN 1 (DOWN SYNDROME CRITICAL REGION PROTEIN 1) (MYOCYTE- ENRICHED CALCINEURIN INTERACTING PROTEIN 1) (MCIP1) (ADAPT78). [Source:SWISSPROT;Acc:P53805] 32467218 32565573 -1 ps.gz pdf data assemblies, translations
DSCR1 ENSG00000159200 Hs.250724 CALCIPRESSIN 1 (DOWN SYNDROME CRITICAL REGION PROTEIN 1) (MYOCYTE- ENRICHED CALCINEURIN INTERACTING PROTEIN 1) (MCIP1) (ADAPT78). [Source:SWISSPROT;Acc:P53805] 32467218 32565573 -1 ps.gz pdf data assemblies, translations
DSCR1 ENSG00000159200 Hs.282326 CALCIPRESSIN 1 (DOWN SYNDROME CRITICAL REGION PROTEIN 1) (MYOCYTE- ENRICHED CALCINEURIN INTERACTING PROTEIN 1) (MCIP1) (ADAPT78). [Source:SWISSPROT;Acc:P53805] 32467218 32565573 -1 ps.gz pdf data assemblies, translations
DSCR1 ENSG00000159200 Hs.298115 CALCIPRESSIN 1 (DOWN SYNDROME CRITICAL REGION PROTEIN 1) (MYOCYTE- ENRICHED CALCINEURIN INTERACTING PROTEIN 1) (MCIP1) (ADAPT78). [Source:SWISSPROT;Acc:P53805] 32467218 32565573 -1 ps.gz pdf data assemblies, translations
RUNX1 ENSG00000159216 Hs.149261 RUNT-RELATED TRANSCRIPTION FACTOR 1 (CORE-BINDING FACTOR 32742490 32843704 -1 ps.gz pdf data assemblies, translations
RUNX1 ENSG00000159216 Hs.297323 RUNT-RELATED TRANSCRIPTION FACTOR 1 (CORE-BINDING FACTOR 32742490 32843704 -1 ps.gz pdf data assemblies, translations
RUNX1 ENSG00000159216 Hs.331483 RUNT-RELATED TRANSCRIPTION FACTOR 1 (CORE-BINDING FACTOR 32742490 32843704 -1 ps.gz pdf data assemblies, translations
RUNX1 ENSG00000159216 Hs.99552 RUNT-RELATED TRANSCRIPTION FACTOR 1 (CORE-BINDING FACTOR 32742490 32843704 -1 ps.gz pdf data assemblies, translations
C21orf18 ENSG00000159225 Hs.50748 PROTEIN C21ORF18. [Source:SWISSPROT;Acc:Q9NVD3] 33985006 34009352 -1 ps.gz pdf data assemblies, translations
CBR1 ENSG00000159228 Hs.88778 CARBONYL REDUCTASE [NADPH] 1 (EC 1.1.1.184) (NADPH-DEPENDENT CARBONYL REDUCTASE 1) (PROSTAGLANDIN-E2 9-REDUCTASE) (EC 1.1.1.189) (PROSTAGLANDIN 9-KETOREDUCTASE) (15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NADP+]) (EC 1.1.1.197). [Source:SWISSPROT;Acc:P16152] 34020487 34023628 1 ps.gz pdf data assemblies, translations
CHAF1B ENSG00000159259 Hs.75238 CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B (CAF-1 SUBUNIT B) (CHROMATIN ASSEMBLY FACTOR I P60 SUBUNIT) (CAF-I 60 KDA SUBUNIT) (CAF-IP60) (M- PHASE PHOSPHOPROTEIN 7). [Source:SWISSPROT;Acc:Q13112] 34336231 34366992 1 ps.gz pdf data assemblies, translations
CLDN14 ENSG00000159261 Hs.266416 CLAUDIN-14. [Source:SWISSPROT;Acc:O95500] 34410781 34430245 -1 ps.gz pdf data assemblies, translations
SIM2 ENSG00000159263 Hs.146186 SINGLE-MINDED HOMOLOG 2. [Source:SWISSPROT;Acc:Q14190] 34649835 34700062 1 ps.gz pdf data assemblies, translations
SIM2 ENSG00000159263 Hs.232123 SINGLE-MINDED HOMOLOG 2. [Source:SWISSPROT;Acc:Q14190] 34649835 34700062 1 ps.gz pdf data assemblies, translations
SIM2 ENSG00000159263 Hs.27311 SINGLE-MINDED HOMOLOG 2. [Source:SWISSPROT;Acc:Q14190] 34649835 34700062 1 ps.gz pdf data assemblies, translations
HLCS ENSG00000159267 Hs.311593 BIOTIN--PROTEIN LIGASE (EC 6.3.4.-) (BIOTIN APO-PROTEIN LIGASE) [INCLUDES: BIOTIN--[METHYLMALONYL-COA-CARBOXYLTRANSFERASE] LIGASE (EC 6.3.4.9); BIOTIN--[PROPIONYL-COA-CARBOXYLASE [ATP-HYDROLYZING]] LIGASE (EC 6.3.4.10) (HOLOC [Source:SWISSPROT;Acc:P50747] 34704394 34889024 -1 ps.gz pdf data assemblies, translations
HLCS ENSG00000159267 Hs.334416 BIOTIN--PROTEIN LIGASE (EC 6.3.4.-) (BIOTIN APO-PROTEIN LIGASE) [INCLUDES: BIOTIN--[METHYLMALONYL-COA-CARBOXYLTRANSFERASE] LIGASE (EC 6.3.4.9); BIOTIN--[PROPIONYL-COA-CARBOXYLASE [ATP-HYDROLYZING]] LIGASE (EC 6.3.4.10) (HOLOC [Source:SWISSPROT;Acc:P50747] 34704394 34889024 -1 ps.gz pdf data assemblies, translations
HLCS ENSG00000159267 Hs.373971 BIOTIN--PROTEIN LIGASE (EC 6.3.4.-) (BIOTIN APO-PROTEIN LIGASE) [INCLUDES: BIOTIN--[METHYLMALONYL-COA-CARBOXYLTRANSFERASE] LIGASE (EC 6.3.4.9); BIOTIN--[PROPIONYL-COA-CARBOXYLASE [ATP-HYDROLYZING]] LIGASE (EC 6.3.4.10) (HOLOC [Source:SWISSPROT;Acc:P50747] 34704394 34889024 -1 ps.gz pdf data assemblies, translations
TTC3 ENSG00000157533 Hs.191363 TETRATRICOPEPTIDE REPEAT PROTEIN 3 (TPR REPEAT PROTEIN D). [Source:SWISSPROT;Acc:P53804] 35036156 35153177 1 ps.gz pdf data assemblies, translations
TTC3 ENSG00000157533 Hs.373692 TETRATRICOPEPTIDE REPEAT PROTEIN 3 (TPR REPEAT PROTEIN D). [Source:SWISSPROT;Acc:P53804] 35036156 35153177 1 ps.gz pdf data assemblies, translations
DYRK1A ENSG00000157540 Hs.104050 DUAL-SPECIFICITY TYROSINE-PHOSPHORYLATION REGULATED KINASE 1A (EC 2.7.1.-) (PROTEIN KINASE MINIBRAIN HOMOLOG) (MNBH) (HP86) (DUAL SPECIFICITY YAK1-RELATED KINASE). [Source:SWISSPROT;Acc:Q13627] 35368978 35465248 1 ps.gz pdf data assemblies, translations
DYRK1A ENSG00000157540 Hs.75842 DUAL-SPECIFICITY TYROSINE-PHOSPHORYLATION REGULATED KINASE 1A (EC 2.7.1.-) (PROTEIN KINASE MINIBRAIN HOMOLOG) (MNBH) (HP86) (DUAL SPECIFICITY YAK1-RELATED KINASE). [Source:SWISSPROT;Acc:Q13627] 35368978 35465248 1 ps.gz pdf data assemblies, translations
KCNJ15 ENSG00000157551 Hs.197612 ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 15 (POTASSIUM CHANNEL 36206435 36251183 1 ps.gz pdf data assemblies, translations
ETS2 ENSG00000157557 Hs.213021 C-ETS-2 PROTEIN. [Source:SWISSPROT;Acc:P15036] 36755653 36773495 1 ps.gz pdf data assemblies, translations
ETS2 ENSG00000157557 Hs.292477 C-ETS-2 PROTEIN. [Source:SWISSPROT;Acc:P15036] 36755653 36773495 1 ps.gz pdf data assemblies, translations
ETS2 ENSG00000157557 Hs.85146 C-ETS-2 PROTEIN. [Source:SWISSPROT;Acc:P15036] 36755653 36773495 1 ps.gz pdf data assemblies, translations
WDR9 ENSG00000157568 Hs.152108 WD-REPEAT PROTEIN 9 (FRAGMENT). [Source:SWISSPROT;Acc:Q9NSI6] 37136724 37262161 -1 ps.gz pdf data assemblies, translations
WDR9 ENSG00000157568 Hs.157447 WD-REPEAT PROTEIN 9 (FRAGMENT). [Source:SWISSPROT;Acc:Q9NSI6] 37136724 37262161 -1 ps.gz pdf data assemblies, translations
WDR9 ENSG00000157568 Hs.196067 WD-REPEAT PROTEIN 9 (FRAGMENT). [Source:SWISSPROT;Acc:Q9NSI6] 37136724 37262161 -1 ps.gz pdf data assemblies, translations
WDR9 ENSG00000157568 Hs.225674 WD-REPEAT PROTEIN 9 (FRAGMENT). [Source:SWISSPROT;Acc:Q9NSI6] 37136724 37262161 -1 ps.gz pdf data assemblies, translations
Q96N32 ENSG00000157576 Hs.251064 CDNA FLJ31471 FIS 37290907 37295119 -1 ps.gz pdf data assemblies, translations
WRB ENSG00000157577 Hs.198308 TRYPTOPHAN-RICH PROTEIN (CONGENITAL HEART DISEASE 5 PROTEIN). [Source:SWISSPROT;Acc:O00258] 37327332 37344681 1 ps.gz pdf data assemblies, translations
C21orf13 ENSG00000157578 Hs.173197 PROTEIN C21ORF13. [Source:SWISSPROT;Acc:O95447] 37352863 37375471 -1 ps.gz pdf data assemblies, translations
C21orf13 ENSG00000157578 Hs.298425 PROTEIN C21ORF13. [Source:SWISSPROT;Acc:O95447] 37352863 37375471 -1 ps.gz pdf data assemblies, translations
BACE2 ENSG00000157591 Hs.131741 BETA SECRETASE 2 PRECURSOR (EC 3.4.23.-) (BETA-SITE APP-CLEAVING ENZYME 2) (ASPARTYL PROTEASE 1) (ASP 1) (ASP1) (MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1) (MEMAPSIN-1). [Source:SWISSPROT;Acc:Q9Y5Z0] 39110435 39219235 1 ps.gz pdf data assemblies, translations
BACE2 ENSG00000157591 Hs.193726 BETA SECRETASE 2 PRECURSOR (EC 3.4.23.-) (BETA-SITE APP-CLEAVING ENZYME 2) (ASPARTYL PROTEASE 1) (ASP 1) (ASP1) (MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1) (MEMAPSIN-1). [Source:SWISSPROT;Acc:Q9Y5Z0] 39110435 39219235 1 ps.gz pdf data assemblies, translations
BACE2 ENSG00000157591 Hs.271411 BETA SECRETASE 2 PRECURSOR (EC 3.4.23.-) (BETA-SITE APP-CLEAVING ENZYME 2) (ASPARTYL PROTEASE 1) (ASP 1) (ASP1) (MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1) (MEMAPSIN-1). [Source:SWISSPROT;Acc:Q9Y5Z0] 39110435 39219235 1 ps.gz pdf data assemblies, translations
C21orf11 ENSG00000157594 Hs.20415 PROTEIN C21ORF11 (PROTEIN PRED44). [Source:SWISSPROT;Acc:P58499] 39259456 39300062 1 ps.gz pdf data assemblies, translations
MX2 ENSG00000157596 Hs.926 INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXB (P78-RELATED PROTEIN). [Source:SWISSPROT;Acc:P20592] 39304670 39351590 1 ps.gz pdf data assemblies, translations
TMPRSS2 ENSG00000157604 Hs.318545 TRANSMEMBRANE PROTEASE 39407265 39450894 -1 ps.gz pdf data assemblies, translations
ANKRD3 ENSG00000141958 Hs.55565 SERINE/THREONINE-PROTEIN KINASE ANKRD3 (EC 2.7.1.-) (ANKYRIN REPEAT DOMAIN PROTEIN 3) (PKC-DELTA-INTERACTING PROTEIN KINASE). [Source:SWISSPROT;Acc:P57078] 39695561 39723282 -1 ps.gz pdf data assemblies, translations
Q9NSE6 ENSG00000157617 Hs.196871 C21ORF258 PROTEIN. [Source:SPTREMBL;Acc:Q9NSE6] 39849776 39918312 -1 ps.gz pdf data assemblies, translations
Q9NSE6 ENSG00000157617 Hs.255024 C21ORF258 PROTEIN. [Source:SPTREMBL;Acc:Q9NSE6] 39849776 39918312 -1 ps.gz pdf data assemblies, translations
ABCG1 ENSG00000160179 Hs.10237 ATP-BINDING CASSETTE 40183927 40261907 1 ps.gz pdf data assemblies, translations
ABCG1 ENSG00000160179 Hs.283384 ATP-BINDING CASSETTE 40183927 40261907 1 ps.gz pdf data assemblies, translations
ABCG1 ENSG00000160179 Hs.369055 ATP-BINDING CASSETTE 40183927 40261907 1 ps.gz pdf data assemblies, translations
TFF1 ENSG00000160182 Hs.162807 PS2 PROTEIN PRECURSOR (HP1.A) (BREAST CANCER ESTROGEN-INDUCIBLE PROTEIN) (PNR-2). [Source:SWISSPROT;Acc:P04155] 40326944 40331197 -1 ps.gz pdf data assemblies, translations
TFF1 ENSG00000160182 Hs.350470 PS2 PROTEIN PRECURSOR (HP1.A) (BREAST CANCER ESTROGEN-INDUCIBLE PROTEIN) (PNR-2). [Source:SWISSPROT;Acc:P04155] 40326944 40331197 -1 ps.gz pdf data assemblies, translations
UBASH3A ENSG00000160185 Hs.183924 UBASH3A PROTEIN. [Source:SWISSPROT;Acc:P57075] 40368575 40412324 1 ps.gz pdf data assemblies, translations
TSGA2 ENSG00000160188 Hs.279542 TESTES SPECIFIC A2 HOMOLOG (MOUSE); MEICHROACIDIN. [Source:RefSeq;Acc:NM_080860] 40437146 40460905 -1 ps.gz pdf data assemblies, translations
TSGA2 ENSG00000160188 Hs.7369 TESTES SPECIFIC A2 HOMOLOG (MOUSE); MEICHROACIDIN. [Source:RefSeq;Acc:NM_080860] 40437146 40460905 -1 ps.gz pdf data assemblies, translations
SLC37A1 ENSG00000160190 Hs.127881 GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE). [Source:SWISSPROT;Acc:P57057] 40478573 40544460 1 ps.gz pdf data assemblies, translations
SLC37A1 ENSG00000160190 Hs.244515 GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE). [Source:SWISSPROT;Acc:P57057] 40478573 40544460 1 ps.gz pdf data assemblies, translations
SLC37A1 ENSG00000160190 Hs.249954 GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE). [Source:SWISSPROT;Acc:P57057] 40478573 40544460 1 ps.gz pdf data assemblies, translations
SLC37A1 ENSG00000160190 Hs.253401 GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE). [Source:SWISSPROT;Acc:P57057] 40478573 40544460 1 ps.gz pdf data assemblies, translations
SLC37A1 ENSG00000160190 Hs.300395 GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE). [Source:SWISSPROT;Acc:P57057] 40478573 40544460 1 ps.gz pdf data assemblies, translations
SLC37A1 ENSG00000160190 Hs.362695 GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE). [Source:SWISSPROT;Acc:P57057] 40478573 40544460 1 ps.gz pdf data assemblies, translations
NDUFV3 ENSG00000160194 Hs.199471 NADH-UBIQUINONE OXIDOREDUCTASE 9 KDA SUBUNIT 40844303 40873758 1 ps.gz pdf data assemblies, translations
NDUFV3 ENSG00000160194 Hs.351217 NADH-UBIQUINONE OXIDOREDUCTASE 9 KDA SUBUNIT 40844303 40873758 1 ps.gz pdf data assemblies, translations
NDUFV3 ENSG00000160194 Hs.59745 NADH-UBIQUINONE OXIDOREDUCTASE 9 KDA SUBUNIT 40844303 40873758 1 ps.gz pdf data assemblies, translations
CBS ENSG00000160200 Hs.171003 CYSTATHIONINE BETA-SYNTHASE (EC 4.2.1.22) (SERINE SULFHYDRASE) (BETA-THIONASE). [Source:SWISSPROT;Acc:P35520] 41018107 41040972 -1 ps.gz pdf data assemblies, translations
U2AF1 ENSG00000160201 Hs.291605 SPLICING FACTOR U2AF 35 KDA SUBUNIT (U2 AUXILIARY FACTOR 35 KDA SUBUNIT) (U2 SNRNP AUXILIARY FACTOR SMALL SUBUNIT). [Source:SWISSPROT;Acc:Q01081] 41057613 41072151 -1 ps.gz pdf data assemblies, translations
CRYAA ENSG00000160202 Hs.184085 ALPHA CRYSTALLIN A CHAIN. [Source:SWISSPROT;Acc:P02489] 41133688 41137460 1 ps.gz pdf data assemblies, translations
HSF2BP ENSG00000160207 Hs.97624 HEAT SHOCK FACTOR 2 BINDING PROTEIN. [Source:SWISSPROT;Acc:O75031] 41455684 41585482 -1 ps.gz pdf data assemblies, translations
NM_021941 ENSG00000160212 Hs.4746   41683374 41688284 1 ps.gz pdf data assemblies, translations
CSTB ENSG00000160213 Hs.695 CYSTATIN B (LIVER THIOL PROTEINASE INHIBITOR) (CPI-B) (STEFIN B). [Source:SWISSPROT;Acc:P04080] 41699939 41702367 -1 ps.gz pdf data assemblies, translations
NM_031487 ENSG00000170243 Hs.173138   41911106 41913129 1 ps.gz pdf data assemblies, translations
TMEM1 ENSG00000160218 Hs.186105 TRANSMEMBRANE PROTEIN 1; EPILEPSY HOLOPROSENCEPHALY CANDIDATE-1 PROTEIN. [Source:RefSeq;Acc:NM_003274] 41938482 42032247 1 ps.gz pdf data assemblies, translations
TMEM1 ENSG00000160218 Hs.94479 TRANSMEMBRANE PROTEIN 1; EPILEPSY HOLOPROSENCEPHALY CANDIDATE-1 PROTEIN. [Source:RefSeq;Acc:NM_003274] 41938482 42032247 1 ps.gz pdf data assemblies, translations
PWP2H ENSG00000160220 Hs.79380 PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG. [Source:SWISSPROT;Acc:Q15269] 42033381 42057169 1 ps.gz pdf data assemblies, translations
ICOL_HUMAN ENSG00000160223 Hs.14155 ICOS LIGAND PRECURSOR (B7 HOMOLOG 2) (B7-H2) (B7-LIKE PROTEIN GL50) (B7-RELATED PROTEIN-1) (B7RP-1). [Source:SWISSPROT;Acc:O75144] 42152823 42166934 -1 ps.gz pdf data assemblies, translations
TRPM2 ENSG00000142185 Hs.133151 LONG TRANSIENT RECEPTOR POTENTIAL CHANNEL 2 (LTRPC2) (TRANSIENT RECEPTOR POTENTIAL CHANNEL 7) (TRPC7). [Source:SWISSPROT;Acc:O94759] 42279244 42368342 1 ps.gz pdf data assemblies, translations
LRRC3 ENSG00000160233 Hs.326579 LEUCINE-RICH REPEAT PROTEIN LRRC3 PRECURSOR. [Source:SWISSPROT;Acc:Q9BY71] 42381896 42382689 1 ps.gz pdf data assemblies, translations
PTTG1IP ENSG00000160253 Hs.111126 PITUITARY TUMOR-TRANSFORMING GENE 1 PROTEIN-INTERACTING PROTEIN (PITUITARY TUMOR-TRANSFORMING GENE PROTEIN BINDING FACTOR) (PTTG- BINDING FACTOR) (PBF). [Source:SWISSPROT;Acc:P53801] 42499979 42798776 -1 ps.gz pdf data assemblies, translations
PTTG1IP ENSG00000160253 Hs.129602 PITUITARY TUMOR-TRANSFORMING GENE 1 PROTEIN-INTERACTING PROTEIN (PITUITARY TUMOR-TRANSFORMING GENE PROTEIN BINDING FACTOR) (PTTG- BINDING FACTOR) (PBF). [Source:SWISSPROT;Acc:P53801] 42499979 42798776 -1 ps.gz pdf data assemblies, translations
PTTG1IP ENSG00000160253 Hs.297526 PITUITARY TUMOR-TRANSFORMING GENE 1 PROTEIN-INTERACTING PROTEIN (PITUITARY TUMOR-TRANSFORMING GENE PROTEIN BINDING FACTOR) (PTTG- BINDING FACTOR) (PBF). [Source:SWISSPROT;Acc:P53801] 42499979 42798776 -1 ps.gz pdf data assemblies, translations
PTTG1IP ENSG00000160253 Hs.58076 PITUITARY TUMOR-TRANSFORMING GENE 1 PROTEIN-INTERACTING PROTEIN (PITUITARY TUMOR-TRANSFORMING GENE PROTEIN BINDING FACTOR) (PTTG- BINDING FACTOR) (PBF). [Source:SWISSPROT;Acc:P53801] 42499979 42798776 -1 ps.gz pdf data assemblies, translations
ITGB2 ENSG00000160255 Hs.83968 INTEGRIN BETA-2 PRECURSOR (CELL SURFACE ADHESION GLYCOPROTEINS LFA- 1/CR3/P150 42810908 42845826 -1 ps.gz pdf data assemblies, translations
ADARB1 ENSG00000014442 Hs.300380 RNA-SPECIFIC ADENOSINE DEAMINASE B1 43053251 43151340 1 ps.gz pdf data assemblies, translations
ADARB1 ENSG00000014442 Hs.85302 RNA-SPECIFIC ADENOSINE DEAMINASE B1 43053251 43151340 1 ps.gz pdf data assemblies, translations
C21orf80 ENSG00000099454 Hs.22982   43188718 43212666 -1 ps.gz pdf data assemblies, translations
FTCD ENSG00000160282 Hs.312858 FORMIMINOTRANSFERASE-CYCLODEAMINASE (FTCD) (LCHC1) [INCLUDES: GLUTAMATE FORMIMINOTRANSFERASE (EC 2.1.2.5) (GLUTAMATE FORMYLTRANSFERASE); FORMIMINOTETRAHYDROFOLATE CYCLODEAMINASE (EC 4.3.1.4)]. [Source:SWISSPROT;Acc:O95954] 44058562 44077139 -1 ps.gz pdf data assemblies, translations
NM_032261 ENSG00000160284 Hs.334681 PUTATIVE PROTEIN C21ORF56. [Source:SWISSPROT;Acc:Q9H0A9] 44082732 44105976 -1 ps.gz pdf data assemblies, translations
MCM3AP ENSG00000160294 Hs.168481 80 KDA MCM3-ASSOCIATED PROTEIN (GANP PROTEIN). [Source:SWISSPROT;Acc:O60318] 44156706 44206894 -1 ps.gz pdf data assemblies, translations
Q9NSX6 ENSG00000160305 Hs.291687   44380628 44489190 1 ps.gz pdf data assemblies, translations
HRMT1L1 ENSG00000160310 Hs.235887 PROTEIN ARGININE N-METHYLTRANSFERASE 2 (EC 2.1.1.-). [Source:SWISSPROT;Acc:P55345] 44557244 44586471 1 ps.gz pdf data assemblies, translations